Super Enhancer Details

General details

Super-Enhancer ID:	SE_00127
Genomic locus:	chr6:144586232-144701565
Size/Length:	115333 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007124
Gene Symbol:	UTRN
Chromosome:	chr6
TSS:	144612872 (Transcription start site)
TES:	145174170 (Transcription end site)
Strand:	+
Number of Exons:	74
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:144586232-144701565
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00127

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005259	SE_00127	chr6	144586232	144588136	1904	324.26
C005260	SE_00127	chr6	144589867	144590822	955	97.84
C005261	SE_00127	chr6	144598500	144599519	1019	103
C005262	SE_00127	chr6	144604884	144610277	5393	3100
C005263	SE_00127	chr6	144612252	144615725	3473	521.36
C005264	SE_00127	chr6	144615760	144621417	5657	3100
C005265	SE_00127	chr6	144628208	144631528	3320	757.12
C005266	SE_00127	chr6	144633183	144639803	6620	2021.12
C005267	SE_00127	chr6	144647234	144649430	2196	255.9
C005268	SE_00127	chr6	144652130	144653870	1740	95.72
C005269	SE_00127	chr6	144655136	144656749	1613	152.2
C005270	SE_00127	chr6	144660741	144667126	6385	2361.14
C005271	SE_00127	chr6	144667622	144687584	19962	2690.84
C005272	SE_00127	chr6	144698138	144701565	3427	290.8