Super Enhancer Details

General details

Super-Enhancer ID:	SE_00129
Genomic locus:	chr13:33796509-33865953
Size/Length:	69444 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_178006
Gene Symbol:	STARD13
Chromosome:	chr13
TSS:	33677271 (Transcription start site)
TES:	34250972 (Transcription end site)
Strand:	-
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr13:33796509-33865953
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00129

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001822	SE_00129	chr13	33796509	33797798	1289	125.87
C001823	SE_00129	chr13	33800642	33806017	5375	1957.97
C001824	SE_00129	chr13	33808157	33812218	4061	1893.44
C001825	SE_00129	chr13	33823977	33828796	4819	1064.35
C001826	SE_00129	chr13	33830015	33847339	17324	2576.25
C001827	SE_00129	chr13	33847664	33862262	14598	3100
C001828	SE_00129	chr13	33862943	33865953	3010	694.45