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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00130
Genomic locus: chr2:189940163-190046261
Size/Length: 106098 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_000393
Gene Symbol: COL5A2
Chromosome: chr2
TSS: 189896640 (Transcription start site)
TES: 190044605 (Transcription end site)
Strand: -
Number of Exons: 54
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr2:189940163-190046261
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00130

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C003529 SE_00130 chr2 189940163 189942675 2512 229.95
C003530 SE_00130 chr2 189946983 189948585 1602 137.57
C003531 SE_00130 chr2 189950023 189951907 1884 131.16
C003532 SE_00130 chr2 189952596 189954791 2195 202.83
C003533 SE_00130 chr2 189955108 189960956 5848 3100
C003534 SE_00130 chr2 189961566 189963647 2081 127.3
C003535 SE_00130 chr2 189967333 189971655 4322 752.3
C003536 SE_00130 chr2 189978467 189979752 1285 204.11
C003537 SE_00130 chr2 189979933 189982028 2095 294.53
C003538 SE_00130 chr2 189992824 189996329 3505 980.99
C003539 SE_00130 chr2 190007059 190018728 11669 3100
C003540 SE_00130 chr2 190021878 190025613 3735 707.65
C003541 SE_00130 chr2 190026169 190037243 11074 3100
C003542 SE_00130 chr2 190040239 190046261 6022 3100