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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00131
Genomic locus: chr5:95995974-96127988
Size/Length: 132014 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NR_033798
Gene Symbol: CAST
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:95995974-96127988
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00131

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004810 SE_00131 chr5 95995974 96001058 5084 3100
C004811 SE_00131 chr5 96003719 96009956 6237 1990.49
C004812 SE_00131 chr5 96012431 96014231 1800 244.6
C004813 SE_00131 chr5 96016064 96017227 1163 145.63
C004814 SE_00131 chr5 96027125 96029460 2335 221.19
C004815 SE_00131 chr5 96034728 96041025 6297 3100
C004816 SE_00131 chr5 96043806 96046748 2942 619.42
C004817 SE_00131 chr5 96046885 96059234 12349 1441.03
C004818 SE_00131 chr5 96060570 96061972 1402 109.02
C004819 SE_00131 chr5 96064016 96065528 1512 160.11
C004820 SE_00131 chr5 96076562 96082846 6284 963.52
C004821 SE_00131 chr5 96085856 96088650 2794 692.9
C004822 SE_00131 chr5 96098592 96101427 2835 268.72
C004823 SE_00131 chr5 96106381 96107897 1516 144.83
C004824 SE_00131 chr5 96113301 96118343 5042 1313.68
C004825 SE_00131 chr5 96123631 96125181 1550 202.36
C004826 SE_00131 chr5 96126332 96127988 1656 182.17