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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00132
Genomic locus: chr7:107530331-107645829
Size/Length: 115498 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_002291
Gene Symbol: LAMB1
Chromosome: chr7
TSS: 107564245 (Transcription start site)
TES: 107643804 (Transcription end site)
Strand: -
Number of Exons: 34
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr7:107530331-107645829
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00132

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005470 SE_00132 chr7 107530331 107536643 6312 2393.75
C005471 SE_00132 chr7 107546770 107551964 5194 854.39
C005472 SE_00132 chr7 107554297 107556702 2405 497.83
C005473 SE_00132 chr7 107556707 107561976 5269 1104.84
C005474 SE_00132 chr7 107563164 107567762 4598 975.04
C005475 SE_00132 chr7 107571314 107572703 1389 95.21
C005476 SE_00132 chr7 107575090 107576655 1565 117.66
C005477 SE_00132 chr7 107577191 107581996 4805 1676.32
C005478 SE_00132 chr7 107585226 107591057 5831 1550.59
C005479 SE_00132 chr7 107593562 107594879 1317 129.17
C005480 SE_00132 chr7 107596861 107603241 6380 2124.83
C005481 SE_00132 chr7 107610701 107618222 7521 2719.27
C005482 SE_00132 chr7 107619057 107620613 1556 135.48
C005483 SE_00132 chr7 107628344 107632057 3713 840.54
C005484 SE_00132 chr7 107633953 107637727 3774 619.82
C005485 SE_00132 chr7 107638106 107645829 7723 2595.83