Super Enhancer Details

General details

Super-Enhancer ID:	SE_00134
Genomic locus:	chr3:124526733-124607932
Size/Length:	81199 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002213
Gene Symbol:	ITGB5
Chromosome:	chr3
TSS:	124480794 (Transcription start site)
TES:	124606152 (Transcription end site)
Strand:	-
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:124526733-124607932
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00134

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004285	SE_00134	chr3	124526733	124535455	8722	3100
C004286	SE_00134	chr3	124544729	124546579	1850	232.58
C004287	SE_00134	chr3	124547020	124559577	12557	3100
C004288	SE_00134	chr3	124561125	124567020	5895	3109.54
C004289	SE_00134	chr3	124567796	124571632	3836	843.38
C004290	SE_00134	chr3	124576400	124582603	6203	2347.49
C004291	SE_00134	chr3	124593431	124599388	5957	3136.54
C004292	SE_00134	chr3	124600571	124607932	7361	2428.96