Super Enhancer Details

General details

Super-Enhancer ID:	SE_00136
Genomic locus:	chr18:71884229-71960606
Size/Length:	76377 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001190807
Gene Symbol:	CYB5A
Chromosome:	chr18
TSS:	71920526 (Transcription start site)
TES:	71959251 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr18:71884229-71960606
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00136

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002890	SE_00136	chr18	71884229	71885521	1292	206.3
C002891	SE_00136	chr18	71896715	71897772	1057	188.83
C002892	SE_00136	chr18	71900023	71904071	4048	3100
C002893	SE_00136	chr18	71909117	71911303	2186	167.7
C002894	SE_00136	chr18	71914346	71925209	10863	3100
C002895	SE_00136	chr18	71925858	71929830	3972	420.37
C002896	SE_00136	chr18	71932206	71935975	3769	546.57
C002897	SE_00136	chr18	71936003	71937786	1783	97.81
C002898	SE_00136	chr18	71937942	71939360	1418	91.94
C002899	SE_00136	chr18	71941601	71946743	5142	1564.38
C002900	SE_00136	chr18	71947071	71960606	13535	3100