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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00137
Genomic locus: chr6:6618133-6786846
Size/Length: 168713 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001168344
Gene Symbol: RREB1
Chromosome: chr6
TSS: 7107829 (Transcription start site)
TES: 7252213 (Transcription end site)
Strand: +
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr6:6618133-6786846
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00137

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C005023 SE_00137 chr6 6618133 6623274 5141 1617.83
C005024 SE_00137 chr6 6631524 6633629 2105 364.16
C005025 SE_00137 chr6 6639210 6643425 4215 2460.4
C005026 SE_00137 chr6 6654362 6660430 6068 893.94
C005027 SE_00137 chr6 6660482 6663327 2845 433.39
C005028 SE_00137 chr6 6665310 6666805 1495 200.31
C005029 SE_00137 chr6 6676734 6678196 1462 156.4
C005030 SE_00137 chr6 6679110 6683524 4414 2224.83
C005031 SE_00137 chr6 6688422 6691846 3424 981.18
C005032 SE_00137 chr6 6694642 6702215 7573 3100
C005033 SE_00137 chr6 6712178 6714189 2011 271.78
C005034 SE_00137 chr6 6722369 6727179 4810 3100
C005035 SE_00137 chr6 6729991 6731320 1329 100.42
C005036 SE_00137 chr6 6733932 6736067 2135 874.82
C005037 SE_00137 chr6 6736408 6738883 2475 1135.08
C005038 SE_00137 chr6 6748266 6753433 5167 2263.69
C005039 SE_00137 chr6 6759058 6760279 1221 113.4
C005040 SE_00137 chr6 6771684 6773799 2115 239.05
C005041 SE_00137 chr6 6780827 6782899 2072 518.31
C005042 SE_00137 chr6 6784497 6786846 2349 307.45