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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00138
Genomic locus: chr13:114739755-114845549
Size/Length: 105794 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_003903
Gene Symbol: CDC16
Chromosome: chr13
TSS: 115000361 (Transcription start site)
TES: 115038150 (Transcription end site)
Strand: +
Number of Exons: 18
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr13:114739755-114845549
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00138

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001913 SE_00138 chr13 114739755 114742997 3242 969.68
C001914 SE_00138 chr13 114744238 114745785 1547 243.17
C001915 SE_00138 chr13 114745811 114747025 1214 139.61
C001916 SE_00138 chr13 114756345 114761325 4980 1006.03
C001917 SE_00138 chr13 114762284 114765627 3343 1421.15
C001918 SE_00138 chr13 114769611 114771529 1918 464.65
C001919 SE_00138 chr13 114778390 114783057 4667 2496.79
C001920 SE_00138 chr13 114786686 114789128 2442 532.86
C001921 SE_00138 chr13 114790197 114794351 4154 3142.14
C001922 SE_00138 chr13 114794959 114804637 9678 2182.98
C001923 SE_00138 chr13 114807889 114809332 1443 449.84
C001924 SE_00138 chr13 114809866 114813621 3755 1849.5
C001925 SE_00138 chr13 114824771 114826029 1258 122
C001926 SE_00138 chr13 114827062 114835371 8309 3100
C001927 SE_00138 chr13 114837690 114838698 1008 97.88
C001928 SE_00138 chr13 114843279 114845549 2270 404.33