Super Enhancer Details

General details

Super-Enhancer ID:	SE_00139
Genomic locus:	chrX:64886466-64944339
Size/Length:	57873 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002444
Gene Symbol:	MSN
Chromosome:	chrX
TSS:	64887510 (Transcription start site)
TES:	64961793 (Transcription end site)
Strand:	+
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chrX:64886466-64944339
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00139

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006135	SE_00139	chrX	64886466	64903258	16792	3100
C006136	SE_00139	chrX	64905551	64912072	6521	3100
C006137	SE_00139	chrX	64914429	64921517	7088	2001.25
C006138	SE_00139	chrX	64922173	64928234	6061	3100
C006139	SE_00139	chrX	64928521	64930710	2189	327.29
C006140	SE_00139	chrX	64931386	64933930	2544	433.82
C006141	SE_00139	chrX	64939069	64941681	2612	427.78
C006142	SE_00139	chrX	64942186	64944339	2153	224.06