Super Enhancer Details

General details

Super-Enhancer ID:	SE_00142
Genomic locus:	chr10:81139024-81207473
Size/Length:	68449 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_153367
Gene Symbol:	ZCCHC24
Chromosome:	chr10
TSS:	81142082 (Transcription start site)
TES:	81205383 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr10:81139024-81207473
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00142

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000935	SE_00142	chr10	81139024	81144600	5576	1717.62
C000936	SE_00142	chr10	81146302	81149054	2752	317.85
C000937	SE_00142	chr10	81150092	81152557	2465	473.37
C000938	SE_00142	chr10	81156094	81174637	18543	3073.72
C000939	SE_00142	chr10	81174686	81176801	2115	233.43
C000940	SE_00142	chr10	81176857	81177916	1059	92.84
C000941	SE_00142	chr10	81181395	81183334	1939	1183.04
C000942	SE_00142	chr10	81183363	81186845	3482	1094.88
C000943	SE_00142	chr10	81189280	81207473	18193	3100