Super Enhancer Details

General details

Super-Enhancer ID:	SE_00144
Genomic locus:	chr5:172259259-172339556
Size/Length:	80297 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001031711
Gene Symbol:	ERGIC1
Chromosome:	chr5
TSS:	172261222 (Transcription start site)
TES:	172379688 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:172259259-172339556
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00144

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004967	SE_00144	chr5	172259259	172264356	5097	2343.47
C004968	SE_00144	chr5	172266243	172268863	2620	225.76
C004969	SE_00144	chr5	172280211	172283971	3760	991.48
C004970	SE_00144	chr5	172284256	172290627	6371	3100
C004971	SE_00144	chr5	172293529	172301423	7894	3100
C004972	SE_00144	chr5	172304555	172307309	2754	1203.75
C004973	SE_00144	chr5	172308594	172315447	6853	1473.09
C004974	SE_00144	chr5	172317482	172320798	3316	1628.47
C004975	SE_00144	chr5	172323122	172326291	3169	1895.78
C004976	SE_00144	chr5	172329096	172333026	3930	1345.56
C004977	SE_00144	chr5	172337383	172339556	2173	287.03