Super Enhancer Details

General details

Super-Enhancer ID:	SE_00145
Genomic locus:	chr2:46523122-46595093
Size/Length:	71971 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001430
Gene Symbol:	EPAS1
Chromosome:	chr2
TSS:	46524540 (Transcription start site)
TES:	46613842 (Transcription end site)
Strand:	+
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:46523122-46595093
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00145

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003209	SE_00145	chr2	46523122	46551339	28217	3100
C003210	SE_00145	chr2	46551383	46568193	16810	3100
C003211	SE_00145	chr2	46569787	46570977	1190	97.6
C003212	SE_00145	chr2	46573059	46580955	7896	1273.95
C003213	SE_00145	chr2	46590342	46591943	1601	136.62
C003214	SE_00145	chr2	46592997	46595093	2096	332.31