Super Enhancer Details

General details

Super-Enhancer ID:	SE_00150
Genomic locus:	chr2:109149628-109212599
Size/Length:	62971 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_004987
Gene Symbol:	LIMS1
Chromosome:	chr2
TSS:	109237701 (Transcription start site)
TES:	109303702 (Transcription end site)
Strand:	+
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:109149628-109212599
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00150

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003387	SE_00150	chr2	109149628	109155036	5408	3100
C003388	SE_00150	chr2	109156573	109159878	3305	971.8
C003389	SE_00150	chr2	109163619	109165497	1878	208.1
C003390	SE_00150	chr2	109168845	109174477	5632	3100
C003391	SE_00150	chr2	109176308	109178251	1943	168.72
C003392	SE_00150	chr2	109178257	109180205	1948	154.55
C003393	SE_00150	chr2	109180361	109199209	18848	2017.42
C003394	SE_00150	chr2	109201848	109208072	6224	2152.71
C003395	SE_00150	chr2	109209249	109212599	3350	706.18