Super Enhancer Details

General details

Super-Enhancer ID:	SE_00151
Genomic locus:	chr19:3334565-3410328
Size/Length:	75763 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005597
Gene Symbol:	NFIC
Chromosome:	chr19
TSS:	3359560 (Transcription start site)
TES:	3469215 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:3334565-3410328
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00151

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002912	SE_00151	chr19	3334565	3339336	4771	3100
C002913	SE_00151	chr19	3343383	3345157	1774	306.3
C002914	SE_00151	chr19	3345857	3347920	2063	771.43
C002915	SE_00151	chr19	3359548	3363219	3671	2254.49
C002916	SE_00151	chr19	3363361	3371589	8228	3100
C002917	SE_00151	chr19	3373729	3376699	2970	1521.5
C002918	SE_00151	chr19	3378172	3379379	1207	102.67
C002919	SE_00151	chr19	3381418	3385787	4369	785.62
C002920	SE_00151	chr19	3385994	3391116	5122	1012.59
C002921	SE_00151	chr19	3394107	3395372	1265	140.36
C002922	SE_00151	chr19	3396545	3400822	4277	2544.13
C002923	SE_00151	chr19	3402119	3405975	3856	3100
C002924	SE_00151	chr19	3406070	3410328	4258	1305.89