Super Enhancer Details

General details

Super-Enhancer ID:	SE_00152
Genomic locus:	chr12:102792147-102878805
Size/Length:	86658 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001111284
Gene Symbol:	IGF1
Chromosome:	chr12
TSS:	102811453 (Transcription start site)
TES:	102874378 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:102792147-102878805
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00152

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001716	SE_00152	chr12	102792147	102793208	1061	104.9
C001717	SE_00152	chr12	102799548	102807365	7817	720.6
C001718	SE_00152	chr12	102809413	102811042	1629	161.89
C001719	SE_00152	chr12	102811144	102812464	1320	107.21
C001720	SE_00152	chr12	102814006	102828154	14148	3100
C001721	SE_00152	chr12	102829291	102830951	1660	209.07
C001722	SE_00152	chr12	102832132	102834827	2695	430.27
C001723	SE_00152	chr12	102846051	102859041	12990	1991.3
C001724	SE_00152	chr12	102859741	102863248	3507	1361.11
C001725	SE_00152	chr12	102863824	102876542	12718	3100
C001726	SE_00152	chr12	102877122	102878805	1683	585.27