Super Enhancer Details

General details

Super-Enhancer ID:	SE_00153
Genomic locus:	chr1:144964316-145035777
Size/Length:	71461 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001195261
Gene Symbol:	PDE4DIP
Chromosome:	chr1
TSS:	144851423 (Transcription start site)
TES:	145039995 (Transcription end site)
Strand:	-
Number of Exons:	46
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:144964316-145035777
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00153

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000410	SE_00153	chr1	144964316	144969649	5333	3100
C000411	SE_00153	chr1	144981791	144985682	3891	3100
C000412	SE_00153	chr1	144986936	144996877	9941	2115.55
C000413	SE_00153	chr1	145001862	145011598	9736	1479.07
C000414	SE_00153	chr1	145012057	145019023	6966	813.71
C000415	SE_00153	chr1	145021681	145025798	4117	182.88
C000416	SE_00153	chr1	145027051	145035777	8726	265.68