Super Enhancer Details

General details

Super-Enhancer ID:	SE_00155
Genomic locus:	chr8:12942965-13026901
Size/Length:	83936 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006094
Gene Symbol:	DLC1
Chromosome:	chr8
TSS:	12940871 (Transcription start site)
TES:	12973753 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:12942965-13026901
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00155

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005600	SE_00155	chr8	12942965	12946540	3575	825.72
C005601	SE_00155	chr8	12950159	12952216	2057	274.13
C005602	SE_00155	chr8	12958442	12960660	2218	549.54
C005603	SE_00155	chr8	12960892	12969473	8581	2125.63
C005604	SE_00155	chr8	12969993	12977426	7433	1638.71
C005605	SE_00155	chr8	12977441	12992718	15277	3100
C005606	SE_00155	chr8	12995533	12996892	1359	118.07
C005607	SE_00155	chr8	13002461	13005792	3331	1191.92
C005608	SE_00155	chr8	13006122	13009418	3296	1213.22
C005609	SE_00155	chr8	13013352	13017509	4157	2023.71
C005610	SE_00155	chr8	13025457	13026901	1444	94.4