Super Enhancer Details

General details

Super-Enhancer ID:	SE_00156
Genomic locus:	chr2:228516969-228585016
Size/Length:	68047 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_025243
Gene Symbol:	SLC19A3
Chromosome:	chr2
TSS:	228549925 (Transcription start site)
TES:	228582745 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:228516969-228585016
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00156

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003611	SE_00156	chr2	228516969	228523253	6284	3100
C003612	SE_00156	chr2	228535046	228542737	7691	3063.7
C003613	SE_00156	chr2	228548107	228549498	1391	165.42
C003614	SE_00156	chr2	228551346	228553531	2185	112.12
C003615	SE_00156	chr2	228558754	228571651	12897	2993.46
C003616	SE_00156	chr2	228572284	228585016	12732	3100