Super Enhancer Details

General details

Super-Enhancer ID:	SE_00157
Genomic locus:	chr1:109894479-109941641
Size/Length:	47162 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002790
Gene Symbol:	PSMA5
Chromosome:	chr1
TSS:	109941652 (Transcription start site)
TES:	109969108 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:109894479-109941641
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00157

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000350	SE_00157	chr1	109894479	109895898	1419	150.22
C000351	SE_00157	chr1	109902968	109905755	2787	204.74
C000352	SE_00157	chr1	109905784	109908138	2354	411.88
C000353	SE_00157	chr1	109908239	109909488	1249	148.91
C000354	SE_00157	chr1	109910680	109916936	6256	2558.28
C000355	SE_00157	chr1	109917233	109918652	1419	224.82
C000356	SE_00157	chr1	109918659	109929923	11264	3100
C000357	SE_00157	chr1	109929953	109941641	11688	3100