Super Enhancer Details

General details

Super-Enhancer ID:	SE_00162
Genomic locus:	chr15:42196454-42265801
Size/Length:	69347 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_139265
Gene Symbol:	EHD4
Chromosome:	chr15
TSS:	42191638 (Transcription start site)
TES:	42264755 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:42196454-42265801
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00162

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002149	SE_00162	chr15	42196454	42197908	1454	272.16
C002150	SE_00162	chr15	42204569	42223737	19168	1819.19
C002151	SE_00162	chr15	42224046	42231849	7803	3100
C002152	SE_00162	chr15	42232053	42234053	2000	109.08
C002153	SE_00162	chr15	42234673	42244924	10251	3100
C002154	SE_00162	chr15	42247144	42249112	1968	329.65
C002155	SE_00162	chr15	42249771	42251160	1389	90.45
C002156	SE_00162	chr15	42258460	42265801	7341	2427.49