Super Enhancer Details

General details

Super-Enhancer ID:	SE_00163
Genomic locus:	chr5:150135837-150182047
Size/Length:	46210 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_032947
Gene Symbol:	SMIM3
Chromosome:	chr5
TSS:	150157507 (Transcription start site)
TES:	150176298 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:150135837-150182047
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00163

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004917	SE_00163	chr5	150135837	150139738	3901	3100
C004918	SE_00163	chr5	150141515	150144316	2801	1567.35
C004919	SE_00163	chr5	150144327	150145402	1075	139.99
C004920	SE_00163	chr5	150156531	150173007	16476	3100
C004921	SE_00163	chr5	150174270	150176441	2171	525.06
C004922	SE_00163	chr5	150179902	150182047	2145	445.15