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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00165
Genomic locus: chr16:53075951-53175874
Size/Length: 99923 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_025134
Gene Symbol: CHD9
Chromosome: chr16
TSS: 53189837 (Transcription start site)
TES: 53361414 (Transcription end site)
Strand: +
Number of Exons: 38
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr16:53075951-53175874
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00165

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002504 SE_00165 chr16 53075951 53078354 2403 391.78
C002505 SE_00165 chr16 53087989 53091181 3192 3100
C002506 SE_00165 chr16 53091978 53093175 1197 91.9
C002507 SE_00165 chr16 53097799 53099089 1290 213.97
C002508 SE_00165 chr16 53099128 53101997 2869 400.86
C002509 SE_00165 chr16 53112954 53116093 3139 1218.41
C002510 SE_00165 chr16 53116590 53121513 4923 3100
C002511 SE_00165 chr16 53123114 53129994 6880 3100
C002512 SE_00165 chr16 53130119 53136706 6587 3100
C002513 SE_00165 chr16 53137030 53138725 1695 202.92
C002514 SE_00165 chr16 53145168 53146930 1762 222.31
C002515 SE_00165 chr16 53154824 53156150 1326 144.53
C002516 SE_00165 chr16 53163053 53167549 4496 2130.6
C002517 SE_00165 chr16 53167882 53169698 1816 263.64
C002518 SE_00165 chr16 53174337 53175874 1537 179.45