Super Enhancer Details

General details

Super-Enhancer ID:	SE_00167
Genomic locus:	chr17:57859239-57931953
Size/Length:	72714 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_029493
Gene Symbol:	MIR21
Chromosome:	chr17
TSS:	57918626 (Transcription start site)
TES:	57918698 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:57859239-57931953
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00167

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002724	SE_00167	chr17	57859239	57865531	6292	3100
C002725	SE_00167	chr17	57866897	57870170	3273	766.16
C002726	SE_00167	chr17	57880084	57881259	1175	105.75
C002727	SE_00167	chr17	57881942	57883640	1698	189.4
C002728	SE_00167	chr17	57884798	57886657	1859	418.36
C002729	SE_00167	chr17	57891439	57894437	2998	1200.09
C002730	SE_00167	chr17	57902759	57904126	1367	145.2
C002731	SE_00167	chr17	57905114	57908645	3531	683.07
C002732	SE_00167	chr17	57913436	57921581	8145	3100
C002733	SE_00167	chr17	57921765	57927189	5424	3100
C002734	SE_00167	chr17	57928463	57931953	3490	934.63