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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00168
Genomic locus: chr10:116363373-116490071
Size/Length: 126698 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001003408
Gene Symbol: ABLIM1
Chromosome: chr10
TSS: 116190868 (Transcription start site)
TES: 116286685 (Transcription end site)
Strand: -
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr10:116363373-116490071
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00168

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001091 SE_00168 chr10 116363373 116366417 3044 764.7
C001092 SE_00168 chr10 116366497 116367839 1342 91.79
C001093 SE_00168 chr10 116368197 116374746 6549 1119.55
C001094 SE_00168 chr10 116374930 116376301 1371 188.39
C001095 SE_00168 chr10 116382517 116385801 3284 451.11
C001096 SE_00168 chr10 116388167 116395691 7524 1346.13
C001097 SE_00168 chr10 116407055 116408883 1828 368.52
C001098 SE_00168 chr10 116409200 116414016 4816 1257.64
C001099 SE_00168 chr10 116414039 116415297 1258 202.73
C001100 SE_00168 chr10 116424595 116427064 2469 404.43
C001101 SE_00168 chr10 116437282 116446365 9083 2500.06
C001102 SE_00168 chr10 116446549 116448161 1612 219
C001103 SE_00168 chr10 116456582 116457540 958 90.57
C001104 SE_00168 chr10 116457629 116458961 1332 133.08
C001105 SE_00168 chr10 116464046 116466910 2864 215.39
C001106 SE_00168 chr10 116467463 116470445 2982 378.43
C001107 SE_00168 chr10 116470595 116481589 10994 3100
C001108 SE_00168 chr10 116488896 116490071 1175 111.87