Super Enhancer Details

General details

Super-Enhancer ID:	SE_00171
Genomic locus:	chr2:87751194-87819799
Size/Length:	68605 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_024204
Gene Symbol:	LINC00152
Chromosome:	chr2
TSS:	87754973 (Transcription start site)
TES:	87821030 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:87751194-87819799
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00171

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003371	SE_00171	chr2	87751194	87762457	11263	3100
C003372	SE_00171	chr2	87768108	87770454	2346	147.9
C003373	SE_00171	chr2	87771297	87775096	3799	692.41
C003374	SE_00171	chr2	87776198	87778129	1931	127.81
C003375	SE_00171	chr2	87782441	87787468	5027	1431.67
C003376	SE_00171	chr2	87793862	87801185	7323	3100
C003377	SE_00171	chr2	87806104	87809689	3585	492.75
C003378	SE_00171	chr2	87810496	87812893	2397	201.27
C003379	SE_00171	chr2	87817602	87819799	2197	399.83