Super Enhancer Details

General details

Super-Enhancer ID:	SE_00172
Genomic locus:	chr2:112188123-112256428
Size/Length:	68305 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_024373
Gene Symbol:	MIR4435-1HG
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:112188123-112256428
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00172

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003396	SE_00172	chr2	112188123	112190319	2196	388.2
C003397	SE_00172	chr2	112193500	112197427	3927	194.15
C003398	SE_00172	chr2	112198238	112201826	3588	492.23
C003399	SE_00172	chr2	112206745	112214079	7334	3100
C003400	SE_00172	chr2	112219325	112224392	5067	1452.7
C003401	SE_00172	chr2	112228403	112231120	2717	130.93
C003402	SE_00172	chr2	112232222	112236056	3834	697.65
C003403	SE_00172	chr2	112236852	112239318	2466	151.89
C003404	SE_00172	chr2	112245156	112256428	11272	3100