Super Enhancer Details

General details

Super-Enhancer ID:	SE_00174
Genomic locus:	chr9:137214672-137302437
Size/Length:	87765 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_023344
Gene Symbol:	RNU6ATAC
Chromosome:	chr9
TSS:	137029561 (Transcription start site)
TES:	137029686 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:137214672-137302437
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00174

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006110	SE_00174	chr9	137214672	137218125	3453	1708.41
C006111	SE_00174	chr9	137218683	137223750	5067	3100
C006112	SE_00174	chr9	137225404	137229452	4048	806.75
C006113	SE_00174	chr9	137230168	137233916	3748	1242
C006114	SE_00174	chr9	137235297	137237715	2418	434.62
C006115	SE_00174	chr9	137247929	137254782	6853	1694.43
C006116	SE_00174	chr9	137256755	137259829	3074	720.58
C006117	SE_00174	chr9	137261148	137271210	10062	3012.15
C006118	SE_00174	chr9	137280611	137281547	936	92.8
C006119	SE_00174	chr9	137286436	137289403	2967	339.05
C006120	SE_00174	chr9	137293955	137302437	8482	2795.35