Super Enhancer Details

General details

Super-Enhancer ID:	SE_00176
Genomic locus:	chr2:75060681-75122798
Size/Length:	62117 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_019896
Gene Symbol:	POLE4
Chromosome:	chr2
TSS:	75185774 (Transcription start site)
TES:	75196859 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:75060681-75122798
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00176

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003362	SE_00176	chr2	75060681	75080639	19958	3100
C003363	SE_00176	chr2	75082411	75086256	3845	677.26
C003364	SE_00176	chr2	75086981	75093593	6612	1248.28
C003365	SE_00176	chr2	75094419	75096864	2445	458.45
C003366	SE_00176	chr2	75097461	75105661	8200	3100
C003367	SE_00176	chr2	75107738	75108810	1072	92.09
C003368	SE_00176	chr2	75109022	75112198	3176	270.03
C003369	SE_00176	chr2	75112597	75116660	4063	718.37
C003370	SE_00176	chr2	75118682	75122798	4116	1046.35