Super Enhancer Details

General details

Super-Enhancer ID:	SE_00178
Genomic locus:	chr12:27389693-27485059
Size/Length:	95366 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015000
Gene Symbol:	STK38L
Chromosome:	chr12
TSS:	27397077 (Transcription start site)
TES:	27478890 (Transcription end site)
Strand:	+
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr12:27389693-27485059
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00178

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001583	SE_00178	chr12	27389693	27392218	2525	225
C001584	SE_00178	chr12	27395912	27400627	4715	3100
C001585	SE_00178	chr12	27400754	27402147	1393	94.82
C001586	SE_00178	chr12	27405406	27415717	10311	3100
C001587	SE_00178	chr12	27423530	27428162	4632	2267.84
C001588	SE_00178	chr12	27428583	27434398	5815	3100
C001589	SE_00178	chr12	27435478	27439895	4417	2074.68
C001590	SE_00178	chr12	27443201	27444992	1791	98.99
C001591	SE_00178	chr12	27445648	27451228	5580	1442.74
C001592	SE_00178	chr12	27457542	27459831	2289	329.73
C001593	SE_00178	chr12	27472089	27473545	1456	203.37
C001594	SE_00178	chr12	27483446	27485059	1613	196.01