Super Enhancer Details

General details

Super-Enhancer ID:	SE_00179
Genomic locus:	chr15:65121772-65198353
Size/Length:	76581 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_025201
Gene Symbol:	PLEKHO2
Chromosome:	chr15
TSS:	65134081 (Transcription start site)
TES:	65160201 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr15:65121772-65198353
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00179

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002293	SE_00179	chr15	65121772	65123237	1465	218.39
C002294	SE_00179	chr15	65127570	65129858	2288	511.68
C002295	SE_00179	chr15	65132229	65141439	9210	3100
C002296	SE_00179	chr15	65142437	65145070	2633	929.93
C002297	SE_00179	chr15	65145612	65151110	5498	1276.95
C002298	SE_00179	chr15	65156102	65157483	1381	98.67
C002299	SE_00179	chr15	65157616	65158623	1007	91.83
C002300	SE_00179	chr15	65164021	65165922	1901	451.22
C002301	SE_00179	chr15	65168253	65172393	4140	1631.13
C002302	SE_00179	chr15	65172839	65178037	5198	3100
C002303	SE_00179	chr15	65184020	65192302	8282	3100
C002304	SE_00179	chr15	65197175	65198353	1178	124.14