Super Enhancer Details

General details

Super-Enhancer ID:	SE_00180
Genomic locus:	chrX:135225892-135297442
Size/Length:	71550 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001167819
Gene Symbol:	FHL1
Chromosome:	chrX
TSS:	135251795 (Transcription start site)
TES:	135293518 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chrX:135225892-135297442
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00180

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006155	SE_00180	chrX	135225892	135227393	1501	145.92
C006156	SE_00180	chrX	135228405	135233456	5051	848.39
C006157	SE_00180	chrX	135236801	135238281	1480	170.39
C006158	SE_00180	chrX	135241623	135243897	2274	222.81
C006159	SE_00180	chrX	135244421	135246486	2065	308.23
C006160	SE_00180	chrX	135247351	135254041	6690	3100
C006161	SE_00180	chrX	135255703	135262907	7204	2684.72
C006162	SE_00180	chrX	135263289	135269238	5949	2054.52
C006163	SE_00180	chrX	135271615	135294062	22447	2072.51
C006164	SE_00180	chrX	135294948	135297442	2494	236.96