Super Enhancer Details

General details

Super-Enhancer ID:	SE_00181
Genomic locus:	chr9:19111271-19187411
Size/Length:	76140 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001122
Gene Symbol:	PLIN2
Chromosome:	chr9
TSS:	19115758 (Transcription start site)
TES:	19127604 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:19111271-19187411
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00181

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005886	SE_00181	chr9	19111271	19113198	1927	215.6
C005887	SE_00181	chr9	19113689	19121831	8142	1977.43
C005888	SE_00181	chr9	19122263	19131772	9509	3100
C005889	SE_00181	chr9	19141621	19144262	2641	871.86
C005890	SE_00181	chr9	19145334	19147536	2202	454.3
C005891	SE_00181	chr9	19147632	19150060	2428	578.91
C005892	SE_00181	chr9	19153923	19156307	2384	222.12
C005893	SE_00181	chr9	19160765	19163513	2748	1931.79
C005894	SE_00181	chr9	19170980	19174828	3848	915.26
C005895	SE_00181	chr9	19181285	19187411	6126	3100