Super Enhancer Details

General details

Super-Enhancer ID:	SE_00183
Genomic locus:	chr8:38557617-38666457
Size/Length:	108840 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001146216
Gene Symbol:	TACC1
Chromosome:	chr8
TSS:	38644721 (Transcription start site)
TES:	38710546 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr8:38557617-38666457
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00183

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005719	SE_00183	chr8	38557617	38560266	2649	684.93
C005720	SE_00183	chr8	38560362	38562441	2079	1294.56
C005721	SE_00183	chr8	38569783	38571516	1733	232.34
C005722	SE_00183	chr8	38583712	38595635	11923	3050.6
C005723	SE_00183	chr8	38601094	38603312	2218	353.77
C005724	SE_00183	chr8	38609734	38611167	1433	127.81
C005725	SE_00183	chr8	38613427	38619940	6513	1439.32
C005726	SE_00183	chr8	38622119	38630072	7953	3100
C005727	SE_00183	chr8	38634604	38639419	4815	883.9
C005728	SE_00183	chr8	38641937	38651402	9465	858.6
C005729	SE_00183	chr8	38652431	38654195	1764	105.87
C005730	SE_00183	chr8	38655472	38656989	1517	130.48
C005731	SE_00183	chr8	38660555	38666457	5902	1791.84