Super Enhancer Details

General details

Super-Enhancer ID:	SE_00184
Genomic locus:	chr5:14143876-14220012
Size/Length:	76136 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007118
Gene Symbol:	TRIO
Chromosome:	chr5
TSS:	14143828 (Transcription start site)
TES:	14509458 (Transcription end site)
Strand:	+
Number of Exons:	57
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr5:14143876-14220012
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00184

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004639	SE_00184	chr5	14143876	14148426	4550	3100
C004640	SE_00184	chr5	14152961	14155749	2788	1513.49
C004641	SE_00184	chr5	14155782	14157982	2200	267.64
C004642	SE_00184	chr5	14166251	14170436	4185	625.64
C004643	SE_00184	chr5	14171051	14173373	2322	202.33
C004644	SE_00184	chr5	14173656	14175316	1660	365.1
C004645	SE_00184	chr5	14176580	14178641	2061	181.78
C004646	SE_00184	chr5	14181037	14194850	13813	3100
C004647	SE_00184	chr5	14196490	14198577	2087	476.32
C004648	SE_00184	chr5	14199341	14200839	1498	215.16
C004649	SE_00184	chr5	14201037	14202376	1339	125.95
C004650	SE_00184	chr5	14202584	14206211	3627	1824.26
C004651	SE_00184	chr5	14207707	14211510	3803	177.27
C004652	SE_00184	chr5	14218317	14220012	1695	152.41