Super Enhancer Details

General details

Super-Enhancer ID:	SE_00185
Genomic locus:	chr1:32370158-32426716
Size/Length:	56558 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_080391
Gene Symbol:	PTP4A2
Chromosome:	chr1
TSS:	32372021 (Transcription start site)
TES:	32385259 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:32370158-32426716
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00185

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000126	SE_00185	chr1	32370158	32371102	944	98.27
C000127	SE_00185	chr1	32371677	32374207	2530	230.02
C000128	SE_00185	chr1	32375781	32377282	1501	141.91
C000129	SE_00185	chr1	32377400	32378774	1374	202.14
C000130	SE_00185	chr1	32386126	32388212	2086	664.35
C000131	SE_00185	chr1	32389123	32390829	1706	264.42
C000132	SE_00185	chr1	32391603	32393593	1990	189.25
C000133	SE_00185	chr1	32393819	32406495	12676	3100
C000134	SE_00185	chr1	32407663	32411759	4096	3100
C000135	SE_00185	chr1	32416425	32418066	1641	160.62
C000136	SE_00185	chr1	32419404	32424304	4900	3100
C000137	SE_00185	chr1	32424331	32426716	2385	794.95