Super Enhancer Details

General details

Super-Enhancer ID:	SE_00188
Genomic locus:	chr3:81765107-81813246
Size/Length:	48139 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_000158
Gene Symbol:	GBE1
Chromosome:	chr3
TSS:	81538849 (Transcription start site)
TES:	81810950 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:81765107-81813246
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00188

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004189	SE_00188	chr3	81765107	81767443	2336	492.79
C004190	SE_00188	chr3	81772075	81773932	1857	238.09
C004191	SE_00188	chr3	81774720	81776765	2045	146.14
C004192	SE_00188	chr3	81777223	81779063	1840	279.09
C004193	SE_00188	chr3	81782967	81784555	1588	99.51
C004194	SE_00188	chr3	81787919	81796890	8971	3100
C004195	SE_00188	chr3	81798004	81799538	1534	221.7
C004196	SE_00188	chr3	81801176	81803782	2606	283.75
C004197	SE_00188	chr3	81804777	81813246	8469	3100