Super Enhancer Details

General details

Super-Enhancer ID:	SE_00189
Genomic locus:	chr6:148812210-148872723
Size/Length:	60513 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_015278
Gene Symbol:	SASH1
Chromosome:	chr6
TSS:	148663728 (Transcription start site)
TES:	148873184 (Transcription end site)
Strand:	+
Number of Exons:	20
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:148812210-148872723
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00189

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005273	SE_00189	chr6	148812210	148826435	14225	3100
C005274	SE_00189	chr6	148827351	148833077	5726	3100
C005275	SE_00189	chr6	148833119	148838232	5113	1084.59
C005276	SE_00189	chr6	148838424	148843889	5465	1294.54
C005277	SE_00189	chr6	148845374	148847114	1740	141.59
C005278	SE_00189	chr6	148850676	148853459	2783	393.93
C005279	SE_00189	chr6	148854083	148860467	6384	514.9
C005280	SE_00189	chr6	148868580	148870471	1891	253.76
C005281	SE_00189	chr6	148871443	148872723	1280	125.97