Super Enhancer Details

General details

Super-Enhancer ID:	SE_00190
Genomic locus:	chr17:38439392-38506366
Size/Length:	66974 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001145301
Gene Symbol:	RARA
Chromosome:	chr17
TSS:	38474472 (Transcription start site)
TES:	38513895 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:38439392-38506366
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00190

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002646	SE_00190	chr17	38439392	38441424	2032	526.76
C002647	SE_00190	chr17	38448907	38451125	2218	362.32
C002648	SE_00190	chr17	38452312	38455485	3173	408.54
C002649	SE_00190	chr17	38459087	38461256	2169	175.97
C002650	SE_00190	chr17	38462389	38470605	8216	3100
C002651	SE_00190	chr17	38472264	38485488	13224	3100
C002652	SE_00190	chr17	38485716	38489696	3980	1802.4
C002653	SE_00190	chr17	38489901	38492131	2230	598.14
C002654	SE_00190	chr17	38496523	38503434	6911	3100
C002655	SE_00190	chr17	38503999	38506366	2367	235.14