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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00191
Genomic locus: chr3:159478582-159601560
Size/Length: 122978 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_001190241
Gene Symbol: IFT80
Chromosome: chr3
TSS: 159974773 (Transcription start site)
TES: 160117320 (Transcription end site)
Strand: -
Number of Exons: 20
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr3:159478582-159601560
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00191

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C004384 SE_00191 chr3 159478582 159485898 7316 3100
C004385 SE_00191 chr3 159492193 159495608 3415 1581.39
C004386 SE_00191 chr3 159496094 159497259 1165 97.95
C004387 SE_00191 chr3 159503872 159508375 4503 3100
C004388 SE_00191 chr3 159511185 159518834 7649 3100
C004389 SE_00191 chr3 159521397 159526792 5395 2526.3
C004390 SE_00191 chr3 159534907 159536307 1400 131.13
C004391 SE_00191 chr3 159546326 159548072 1746 138.97
C004392 SE_00191 chr3 159553441 159556196 2755 638.75
C004393 SE_00191 chr3 159556431 159557453 1022 94.87
C004394 SE_00191 chr3 159558194 159559440 1246 102.4
C004395 SE_00191 chr3 159568534 159575374 6840 1925.49
C004396 SE_00191 chr3 159577857 159579515 1658 115.67
C004397 SE_00191 chr3 159581770 159585902 4132 309.94
C004398 SE_00191 chr3 159592520 159593854 1334 95.51
C004399 SE_00191 chr3 159599323 159601560 2237 197.88