Super Enhancer Details

General details

Super-Enhancer ID:	SE_00192
Genomic locus:	chr11:128326149-128401251
Size/Length:	75102 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005238
Gene Symbol:	ETS1
Chromosome:	chr11
TSS:	128328655 (Transcription start site)
TES:	128392205 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:128326149-128401251
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00192

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001502	SE_00192	chr11	128326149	128328991	2842	456.04
C001503	SE_00192	chr11	128332466	128340394	7928	2421.3
C001504	SE_00192	chr11	128343065	128345670	2605	436.61
C001505	SE_00192	chr11	128348016	128354608	6592	1775.73
C001506	SE_00192	chr11	128360505	128382860	22355	1177.6
C001507	SE_00192	chr11	128383616	128386284	2668	318.73
C001508	SE_00192	chr11	128386313	128396841	10528	3100
C001509	SE_00192	chr11	128399438	128401251	1813	168.5