Super Enhancer Details

General details

Super-Enhancer ID:	SE_00195
Genomic locus:	chr2:161208059-161289809
Size/Length:	81750 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_016836
Gene Symbol:	RBMS1
Chromosome:	chr2
TSS:	161128661 (Transcription start site)
TES:	161350318 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:161208059-161289809
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00195

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003462	SE_00195	chr2	161208059	161209462	1403	98.23
C003463	SE_00195	chr2	161218291	161223356	5065	954.24
C003464	SE_00195	chr2	161223816	161240345	16529	3100
C003465	SE_00195	chr2	161240364	161248469	8105	2007.63
C003466	SE_00195	chr2	161250030	161252076	2046	129.18
C003467	SE_00195	chr2	161252183	161255265	3082	454.75
C003468	SE_00195	chr2	161258298	161268879	10581	3100
C003469	SE_00195	chr2	161273561	161277659	4098	582.24
C003470	SE_00195	chr2	161280516	161282992	2476	380.49
C003471	SE_00195	chr2	161283633	161286049	2416	795.89
C003472	SE_00195	chr2	161288440	161289809	1369	152.87