Super Enhancer Details

General details

Super-Enhancer ID:	SE_00196
Genomic locus:	chr3:111434862-111523742
Size/Length:	88880 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001134438
Gene Symbol:	PHLDB2
Chromosome:	chr3
TSS:	111578026 (Transcription start site)
TES:	111695364 (Transcription end site)
Strand:	+
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:111434862-111523742
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00196

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C004202	SE_00196	chr3	111434862	111437247	2385	645.42
C004203	SE_00196	chr3	111442217	111443711	1494	99.48
C004204	SE_00196	chr3	111453522	111461117	7595	1240.41
C004205	SE_00196	chr3	111461359	111463207	1848	295.04
C004206	SE_00196	chr3	111468004	111471454	3450	1617.04
C004207	SE_00196	chr3	111478485	111485353	6868	3100
C004208	SE_00196	chr3	111485944	111489676	3732	1524.48
C004209	SE_00196	chr3	111500340	111505156	4816	3100
C004210	SE_00196	chr3	111505796	111507854	2058	214.69
C004211	SE_00196	chr3	111514710	111517449	2739	2525.05
C004212	SE_00196	chr3	111518353	111523742	5389	3100