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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00199
Genomic locus: chr14:70053133-70196618
Size/Length: 143485 bp
Genome: Human - hg19
Cell/Tissue: Adipose Nuclei
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_014734
Gene Symbol: KIAA0247
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr14:70053133-70196618
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00199

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C002065 SE_00199 chr14 70053133 70054246 1113 112.03
C002066 SE_00199 chr14 70059527 70060781 1254 124.17
C002067 SE_00199 chr14 70072077 70074608 2531 188.18
C002068 SE_00199 chr14 70076421 70084117 7696 3100
C002069 SE_00199 chr14 70091728 70093470 1742 204.03
C002070 SE_00199 chr14 70099323 70104596 5273 1045.58
C002071 SE_00199 chr14 70113957 70121507 7550 1656.36
C002072 SE_00199 chr14 70124251 70125647 1396 236.74
C002073 SE_00199 chr14 70129141 70134500 5359 931.74
C002074 SE_00199 chr14 70139682 70142136 2454 232.47
C002075 SE_00199 chr14 70148670 70153017 4347 1037.14
C002076 SE_00199 chr14 70158325 70164274 5949 2659.59
C002077 SE_00199 chr14 70167411 70172951 5540 832.22
C002078 SE_00199 chr14 70176230 70180830 4600 1844.99
C002079 SE_00199 chr14 70182312 70184393 2081 534.05
C002080 SE_00199 chr14 70193515 70196618 3103 403.62