Super Enhancer Details

General details

Super-Enhancer ID:	SE_00200
Genomic locus:	chr1:64934715-65022732
Size/Length:	88017 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020925
Gene Symbol:	CACHD1
Chromosome:	chr1
TSS:	64971596 (Transcription start site)
TES:	65158741 (Transcription end site)
Strand:	+
Number of Exons:	26
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:64934715-65022732
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00200

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C000228	SE_00200	chr1	64934715	64938516	3801	1786.47
C000229	SE_00200	chr1	64939761	64943394	3633	1158.01
C000230	SE_00200	chr1	64943651	64946258	2607	333.16
C000231	SE_00200	chr1	64947507	64948873	1366	123.8
C000232	SE_00200	chr1	64961012	64966466	5454	1358.91
C000233	SE_00200	chr1	64966770	64971182	4412	481.45
C000234	SE_00200	chr1	64971222	64973312	2090	250.35
C000235	SE_00200	chr1	64975380	64977672	2292	167.88
C000236	SE_00200	chr1	64977843	64984381	6538	2616.32
C000237	SE_00200	chr1	64988460	64994446	5986	3109.55
C000238	SE_00200	chr1	65001841	65003383	1542	159.87
C000239	SE_00200	chr1	65003644	65014906	11262	3100
C000240	SE_00200	chr1	65014926	65017603	2677	382.31
C000241	SE_00200	chr1	65021409	65022732	1323	127.78