Super Enhancer Details

General details

Super-Enhancer ID:	SE_00203
Genomic locus:	chr17:71273803-71337087
Size/Length:	63284 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_012121
Gene Symbol:	CDC42EP4
Chromosome:	chr17
TSS:	71279762 (Transcription start site)
TES:	71308143 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:71273803-71337087
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00203

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002739	SE_00203	chr17	71273803	71275722	1919	271.13
C002740	SE_00203	chr17	71279308	71280989	1681	260.67
C002741	SE_00203	chr17	71281786	71292211	10425	3100
C002742	SE_00203	chr17	71293637	71295348	1711	571.73
C002743	SE_00203	chr17	71295549	71297190	1641	230.31
C002744	SE_00203	chr17	71299491	71309355	9864	3100
C002745	SE_00203	chr17	71312450	71314833	2383	939.73
C002746	SE_00203	chr17	71319783	71322758	2975	1458.67
C002747	SE_00203	chr17	71329394	71330727	1333	229.98
C002748	SE_00203	chr17	71335983	71337087	1104	153.02