Super Enhancer Details

General details

Super-Enhancer ID:	SE_00205
Genomic locus:	chr11:75778577-75865994
Size/Length:	87417 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003369
Gene Symbol:	UVRAG
Chromosome:	chr11
TSS:	75526211 (Transcription start site)
TES:	75855282 (Transcription end site)
Strand:	+
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:75778577-75865994
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00205

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001321	SE_00205	chr11	75778577	75781101	2524	719.38
C001322	SE_00205	chr11	75781995	75787197	5202	1501.87
C001323	SE_00205	chr11	75787812	75789587	1775	554.76
C001324	SE_00205	chr11	75791488	75800996	9508	3200.44
C001325	SE_00205	chr11	75807981	75809526	1545	150.62
C001326	SE_00205	chr11	75819474	75821029	1555	93.84
C001327	SE_00205	chr11	75827970	75837224	9254	1869.64
C001328	SE_00205	chr11	75839588	75848532	8944	3100
C001329	SE_00205	chr11	75851171	75852968	1797	295.41
C001330	SE_00205	chr11	75862410	75865994	3584	2585.65