Super Enhancer Details

General details

Super-Enhancer ID:	SE_00206
Genomic locus:	chr11:63320527-63382492
Size/Length:	61965 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_007069
Gene Symbol:	PLA2G16
Chromosome:	chr11
TSS:	63341943 (Transcription start site)
TES:	63381941 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:63320527-63382492
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00206

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001250	SE_00206	chr11	63320527	63324153	3626	401
C001251	SE_00206	chr11	63327322	63329109	1787	473.31
C001252	SE_00206	chr11	63333655	63335930	2275	376.32
C001253	SE_00206	chr11	63340254	63345737	5483	2468.09
C001254	SE_00206	chr11	63348877	63353077	4200	732.1
C001255	SE_00206	chr11	63355554	63357815	2261	161.07
C001256	SE_00206	chr11	63360346	63363901	3555	496.21
C001257	SE_00206	chr11	63364526	63382492	17966	3100