Super Enhancer Details

General details

Super-Enhancer ID:	SE_00210
Genomic locus:	chr20:33461811-33538709
Size/Length:	76898 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001076552
Gene Symbol:	ACSS2
Chromosome:	chr20
TSS:	33462765 (Transcription start site)
TES:	33515769 (Transcription end site)
Strand:	+
Number of Exons:	18
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr20:33461811-33538709
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00210

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C003667	SE_00210	chr20	33461811	33473943	12132	3100
C003668	SE_00210	chr20	33474457	33476824	2367	223.11
C003669	SE_00210	chr20	33477095	33481304	4209	2278.18
C003670	SE_00210	chr20	33481870	33484802	2932	430.96
C003671	SE_00210	chr20	33487914	33490166	2252	461.67
C003672	SE_00210	chr20	33490900	33493969	3069	787.56
C003673	SE_00210	chr20	33494836	33496853	2017	761.16
C003674	SE_00210	chr20	33497775	33498899	1124	98.62
C003675	SE_00210	chr20	33500384	33504735	4351	929.12
C003676	SE_00210	chr20	33505393	33516923	11530	3100
C003677	SE_00210	chr20	33517655	33519427	1772	241.24
C003678	SE_00210	chr20	33522243	33524599	2356	165.97
C003679	SE_00210	chr20	33524684	33527414	2730	307.19
C003680	SE_00210	chr20	33532920	33538709	5789	2089.73