Super Enhancer Details

General details

Super-Enhancer ID:	SE_00212
Genomic locus:	chr11:75264080-75296640
Size/Length:	32560 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001235
Gene Symbol:	SERPINH1
Chromosome:	chr11
TSS:	75273100 (Transcription start site)
TES:	75283849 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:75264080-75296640
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00212

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001303	SE_00212	chr11	75264080	75279596	15516	3100
C001304	SE_00212	chr11	75280657	75282377	1720	242.27
C001305	SE_00212	chr11	75282897	75284153	1256	128.49
C001306	SE_00212	chr11	75293050	75296640	3590	1412.35